Structure of the PCV2d virus-like particle

This is a large structure.

Summary for 6OLA

EMDB information20113
DescriptorCapsid protein, DNA (5'-D(P*CP*CP*GP*G)-3') (2 entities in total)
Functional Keywordscircovirus, viral jelly roll, virus like particle
Biological sourcePorcine circovirus 2 (PCV2)
Total number of polymer chains120
Total molecular weight1455712.62
Khayat, R.,Wen, K.,Alimova, A.,Galarza, J.,Gottlieb, P. (deposition date: 2019-04-16, release date: 2019-09-25, Last modification date: 2019-12-18)
Primary citation
Khayat, R.,Wen, K.,Alimova, A.,Gavrilov, B.,Katz, A.,Galarza, J.M.,Gottlieb, P.
Structural characterization of the PCV2d virus-like particle at 3.3 angstrom resolution reveals differences to PCV2a and PCV2b capsids, a tetranucleotide, and an N-terminus near the icosahedral 3-fold axes.
Virology, 537:186-197, 2019
PubMed: 31505320 (PDB entries with the same primary citation)
DOI: 10.1016/j.virol.2019.09.001
MImport into Mendeley
Experimental method

Structure validation

Ramachandran outliersSidechain outliers0 8.7%MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures
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PDB entries from 2020-10-28