6SGB

mt-SSU assemblosome of Trypanosoma brucei

This is a large structure.
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Functional Information from GO Data

ChainGOidnamespacecontents
DV0005763cellular_componentmitochondrial small ribosomal subunit
FD0005739cellular_componentmitochondrion
Ci0005763cellular_componentmitochondrial small ribosomal subunit
Cn0020023cellular_componentkinetoplast
Cn0005739cellular_componentmitochondrion
Cg0097014cellular_componentciliary plasm
Cg0005737cellular_componentcytoplasm
Cg0005763cellular_componentmitochondrial small ribosomal subunit
Cg0031981cellular_componentnuclear lumen
Cg0003735molecular_functionstructural constituent of ribosome
Cj0005763cellular_componentmitochondrial small ribosomal subunit
CN0005763cellular_componentmitochondrial small ribosomal subunit
FK0005759cellular_componentmitochondrial matrix
FK0005739cellular_componentmitochondrion
FK0097177molecular_functionmitochondrial ribosome binding
FK0003729molecular_functionmRNA binding
FK0008494molecular_functiontranslation activator activity
FK0070131biological_processpositive regulation of mitochondrial translation
DY0020023cellular_componentkinetoplast
DY0005763cellular_componentmitochondrial small ribosomal subunit
DY0005739cellular_componentmitochondrion
DZ0005763cellular_componentmitochondrial small ribosomal subunit
DT0005763cellular_componentmitochondrial small ribosomal subunit
Fc0005759cellular_componentmitochondrial matrix
Fc0005747cellular_componentmitochondrial respiratory chain complex I
Fc0005739cellular_componentmitochondrion
Fc0000035molecular_functionacyl binding
Fc0000036molecular_functionacyl carrier activity
Fc0006633biological_processfatty acid biosynthetic process
F70005763cellular_componentmitochondrial small ribosomal subunit
FF0008168molecular_functionmethyltransferase activity
FF0071424molecular_functionrRNA (cytosine-N4-)-methyltransferase activity
FF0070475biological_processrRNA base methylation
DJ0005737cellular_componentcytoplasm
DJ0005763cellular_componentmitochondrial small ribosomal subunit
FX0005737cellular_componentcytoplasm
FX0005829cellular_componentcytosol
FX0020023cellular_componentkinetoplast
FX0005739cellular_componentmitochondrion
Fd0020023cellular_componentkinetoplast
Fd0005739cellular_componentmitochondrion
CI0005763cellular_componentmitochondrial small ribosomal subunit
CI0003735molecular_functionstructural constituent of ribosome
CI0006412biological_processtranslation
Ck0005737cellular_componentcytoplasm
Ck0031019cellular_componentmitochondrial mRNA editing complex
Ck0003723molecular_functionRNA binding
Ck0000963biological_processmitochondrial RNA processing
Ck0048255biological_processmRNA stabilization
Ck0043631biological_processRNA polyadenylation
CP0005737cellular_componentcytoplasm
CP0005763cellular_componentmitochondrial small ribosomal subunit
Cp0005763cellular_componentmitochondrial small ribosomal subunit
Cp0005739cellular_componentmitochondrion
F60005739cellular_componentmitochondrion
CF0005763cellular_componentmitochondrial small ribosomal subunit
CO0005763cellular_componentmitochondrial small ribosomal subunit
F10005763cellular_componentmitochondrial small ribosomal subunit
F10008168molecular_functionmethyltransferase activity
F10003735molecular_functionstructural constituent of ribosome
F10006412biological_processtranslation
FW0005739cellular_componentmitochondrion
FA0020023cellular_componentkinetoplast
FA0005739cellular_componentmitochondrion
DO0005763cellular_componentmitochondrial small ribosomal subunit
DO0044145biological_processmodulation of development of symbiont involved in interaction with host
DO0052106biological_processquorum sensing involved in interaction with host
Fe0005737cellular_componentcytoplasm
Cd0005763cellular_componentmitochondrial small ribosomal subunit
CK0005763cellular_componentmitochondrial small ribosomal subunit
CK0003735molecular_functionstructural constituent of ribosome
CK0006412biological_processtranslation
DE0020023cellular_componentkinetoplast
DE0031019cellular_componentmitochondrial mRNA editing complex
DE0005739cellular_componentmitochondrion
DE0003723molecular_functionRNA binding
DE0000963biological_processmitochondrial RNA processing
DE0048255biological_processmRNA stabilization
DE0043631biological_processRNA polyadenylation
FQ0097014cellular_componentciliary plasm
FQ0005737cellular_componentcytoplasm
FQ0016021cellular_componentintegral component of membrane
FQ0016020cellular_componentmembrane
FQ0005739cellular_componentmitochondrion
FQ0008076cellular_componentvoltage-gated potassium channel complex
FQ0015272molecular_functionATP-activated inward rectifier potassium channel activity
FQ0005249molecular_functionvoltage-gated potassium channel activity
FQ0071805biological_processpotassium ion transmembrane transport
FQ0006813biological_processpotassium ion transport
FQ0051260biological_processprotein homooligomerization
FR0097014cellular_componentciliary plasm
FR0005737cellular_componentcytoplasm
FR0016021cellular_componentintegral component of membrane
FR0016020cellular_componentmembrane
FR0005739cellular_componentmitochondrion
FR0008076cellular_componentvoltage-gated potassium channel complex
FR0015272molecular_functionATP-activated inward rectifier potassium channel activity
FR0005249molecular_functionvoltage-gated potassium channel activity
FR0071805biological_processpotassium ion transmembrane transport
FR0006813biological_processpotassium ion transport
FR0051260biological_processprotein homooligomerization
FS0097014cellular_componentciliary plasm
FS0005737cellular_componentcytoplasm
FS0016021cellular_componentintegral component of membrane
FS0016020cellular_componentmembrane
FS0005739cellular_componentmitochondrion
FS0008076cellular_componentvoltage-gated potassium channel complex
FS0015272molecular_functionATP-activated inward rectifier potassium channel activity
FS0005249molecular_functionvoltage-gated potassium channel activity
FS0071805biological_processpotassium ion transmembrane transport
FS0006813biological_processpotassium ion transport
FS0051260biological_processprotein homooligomerization
FT0097014cellular_componentciliary plasm
FT0005737cellular_componentcytoplasm
FT0016021cellular_componentintegral component of membrane
FT0016020cellular_componentmembrane
FT0005739cellular_componentmitochondrion
FT0008076cellular_componentvoltage-gated potassium channel complex
FT0015272molecular_functionATP-activated inward rectifier potassium channel activity
FT0005249molecular_functionvoltage-gated potassium channel activity
FT0071805biological_processpotassium ion transmembrane transport
FT0006813biological_processpotassium ion transport
FT0051260biological_processprotein homooligomerization
FU0097014cellular_componentciliary plasm
FU0005737cellular_componentcytoplasm
FU0016021cellular_componentintegral component of membrane
FU0016020cellular_componentmembrane
FU0005739cellular_componentmitochondrion
FU0008076cellular_componentvoltage-gated potassium channel complex
FU0015272molecular_functionATP-activated inward rectifier potassium channel activity
FU0005249molecular_functionvoltage-gated potassium channel activity
FU0071805biological_processpotassium ion transmembrane transport
FU0006813biological_processpotassium ion transport
FU0051260biological_processprotein homooligomerization
Ca0005763cellular_componentmitochondrial small ribosomal subunit
Ca0005739cellular_componentmitochondrion
FO0005737cellular_componentcytoplasm
FO0005763cellular_componentmitochondrial small ribosomal subunit
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Functional Information from PDB Data

site_idNumber of ResiduesDetails
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Functional Information from PDB atom coordinates for the "HETATM" binding sites

site_idNumber of ResiduesDetails
PM8_6sgb_Fc_20123S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE binding site
ChainResidueligand
F5LEU750PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbTHR27PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbGLN29-GLN30PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbCYS32PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbLEU36PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbARG57-VAL58PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbGLU61-PHE62PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbTYR65-SER66PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbGLU68PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbVAL74PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbLEU77-VAL78PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbGLY81PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbVAL84PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbILE136PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FbARG143PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
FcASN104-LEU106PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE

UBD_6sgb_CA_62011URIDINE 3',5'-BIS(DIHYDROGEN PHOSPHATE) binding site
ChainResidueligand
FaSER5UBD: URIDINE 3',5'-BIS(DIHYDROGEN PHOSPHATE)
FaTHR7-PHE12UBD: URIDINE 3',5'-BIS(DIHYDROGEN PHOSPHATE)
FaARG23-TYR24UBD: URIDINE 3',5'-BIS(DIHYDROGEN PHOSPHATE)
FaLYS53UBD: URIDINE 3',5'-BIS(DIHYDROGEN PHOSPHATE)
CAU619UBD: URIDINE 3',5'-BIS(DIHYDROGEN PHOSPHATE)

GTP_6sgb_Cg_50127GUANOSINE-5'-TRIPHOSPHATE binding site
ChainResidueligand
CgGLY95-VAL97GTP: GUANOSINE-5'-TRIPHOSPHATE
CgGLN99-THR100GTP: GUANOSINE-5'-TRIPHOSPHATE
CgGLY108-LEU110GTP: GUANOSINE-5'-TRIPHOSPHATE
CgARG112GTP: GUANOSINE-5'-TRIPHOSPHATE
CgPRO150-ALA157GTP: GUANOSINE-5'-TRIPHOSPHATE
CgGLN161GTP: GUANOSINE-5'-TRIPHOSPHATE
CgTHR357-ASP360GTP: GUANOSINE-5'-TRIPHOSPHATE
CgPHE404GTP: GUANOSINE-5'-TRIPHOSPHATE
CgPHE412GTP: GUANOSINE-5'-TRIPHOSPHATE
CgPRO452-GLN453GTP: GUANOSINE-5'-TRIPHOSPHATE
CgVAL456GTP: GUANOSINE-5'-TRIPHOSPHATE

SAH_6sgb_F1_110225S-ADENOSYL-L-HOMOCYSTEINE binding site
ChainResidueligand
F1TYR248SAH: S-ADENOSYL-L-HOMOCYSTEINE
F1TYR256SAH: S-ADENOSYL-L-HOMOCYSTEINE
F1MET264SAH: S-ADENOSYL-L-HOMOCYSTEINE
F1ASP289-ALA297SAH: S-ADENOSYL-L-HOMOCYSTEINE
F1VAL482-SER485SAH: S-ADENOSYL-L-HOMOCYSTEINE
F1MET488SAH: S-ADENOSYL-L-HOMOCYSTEINE
F1ALA524-SER526SAH: S-ADENOSYL-L-HOMOCYSTEINE
F1GLU529-ALA531SAH: S-ADENOSYL-L-HOMOCYSTEINE
F1GLU534SAH: S-ADENOSYL-L-HOMOCYSTEINE
F1ILE539SAH: S-ADENOSYL-L-HOMOCYSTEINE

SAH_6sgb_FF_50126S-ADENOSYL-L-HOMOCYSTEINE binding site
ChainResidueligand
FFHIS18-PRO19SAH: S-ADENOSYL-L-HOMOCYSTEINE
FFCYS133-HIS140SAH: S-ADENOSYL-L-HOMOCYSTEINE
FFLEU157-ASP160SAH: S-ADENOSYL-L-HOMOCYSTEINE
FFCYS184-MET186SAH: S-ADENOSYL-L-HOMOCYSTEINE
FFASP204-SER208SAH: S-ADENOSYL-L-HOMOCYSTEINE
FFGLN211SAH: S-ADENOSYL-L-HOMOCYSTEINE
FFPHE233SAH: S-ADENOSYL-L-HOMOCYSTEINE
FFGLU332SAH: S-ADENOSYL-L-HOMOCYSTEINE
FFARG355SAH: S-ADENOSYL-L-HOMOCYSTEINE

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Functional Information from PROSITE/UniProt

site_idNumber of ResiduesDetails
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Functional Information from SwissProt/UniProt

site_idNumber of ResiduesDetails
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Catalytic Information from CSA

site_idNumber of ResiduesDetails