[English] 日本語
EM Navigator
- 3D electron microscopy data navigator -

-
Browse 3DEM data

-
Recently released data

Release date: (EMDB: 71, PDB: 49)


Covid-19 / SARS-CoV-2 / Advanced search / Covid-19 info

DNA or RNA, (replication, transcription, etc.) / Advanced search

Ribosome & component / Advanced search

Protein folding and degradation / Advanced search

Membrane protein, pore forming, transformation / Advanced search

Bacterial flagellum, needle, pilli, & secretion machinery / Advanced search

Amyloid / Tau fibril / Advanced search

Virus & component / Advanced search

Engineered molecules (DNA origami, synthetic peptides) / Advanced search

Q: When the data are updated?

-
Recent 3DEM papers

-
Modular basis for potent SARS-CoV-2 neutralization by a prevalent VH1-2-derived antibody class.

-
Structure of the human Mediator-bound transcription preinitiation complex.

+
Structural insights into preinitiation complex assembly on core promoters.

+
Cryo-EM structure of the human histamine H receptor/G complex.

+
Structural basis of FANCD2 deubiquitination by USP1-UAF1.

Show all 3DEM papers

-
About EM Navigator

-
News

-
Aug 12, 2020. New: Covid-19 info

New: Covid-19 info

  • New page: Covid-19 featured information page in EM Navigator

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

-
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. New: Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

  • Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.
    PageDataFormat
    EMN Searchsearch resultCSV, TSV, or JSON
    EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force. (see PDBe EMDB page)
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is "EMD"? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB at PDBe / Contact to PDBj

+
Feb 20, 2018. PDBj/BINDS workshop in Osaka University

PDBj/BINDS workshop in Osaka University

    Read more

    -
    EM Navigator

    3D electron microscopy data browser

    • Browser for 3D electron microscopy (3D-EM) data of biological molecules and assemblies.

    Related info.:EMDB / PDB / PDBj / Q: What is the data source of EM Navigator? / EMN Search / EMN Papers / EMN Gallery / EMN Statistics / Changes in new EM Navigator and Yorodumi

    Read more