Author results

1MPT
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CRYSTAL STRUCTURE OF A NEW ALKALINE SERINE PROTEASE (M-PROTEASE) FROM BACILLUS SP. KSM-K16
Descriptor:M-PROTEASE, CALCIUM ION
Authors:Yamane, T., Kani, T., Hatanaka, T., Suzuki, A., Ashida, T., Kobayashi, T., Ito, S., Yamashita, O.
Deposit date:1994-04-13
Release date:1994-06-22
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of a new alkaline serine protease (M-protease) from Bacillus sp. KSM-K16.
Acta Crystallogr.,Sect.D, 51, 1995
1JWQ
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STRUCTURE OF THE CATALYTIC DOMAIN OF CWLV, N-ACETYLMURAMOYL-L-ALANINE AMIDASE FROM BACILLUS(PAENIBACILLUS) POLYMYXA VAR.COLISTINUS
Descriptor:N-ACETYLMURAMOYL-L-ALANINE AMIDASE CwlV, ZINC ION
Authors:Yamane, T., Koyama, Y., Nojiri, Y., Hikage, T., Akita, M., Suzuki, A., Shirai, T., Ise, F., Shida, T., Sekiguchi, J.
Deposit date:2001-09-05
Release date:2003-11-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Structure of the catalytic domain of N-acetylmuramoyl-L-alanine amidase, a cell wall hydrolase from Bacillus polymyxa var.colistinus and its resemblance to the structure of carboxypeptidases
To be Published
2Z33
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SOLUTION STRUCTURE OF THE DNA COMPLEX OF PHOB DNA-BINDING/TRANSACTIVATION DOMAIN
Descriptor:5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3', 5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3', Phosphate regulon transcriptional regulatory protein phoB
Authors:Yamane, T., Okamura, H., Ikeguchi, M., Nishimura, Y., Kidera, A.
Deposit date:2007-05-31
Release date:2008-04-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Proteins, 71, 2008
2ZE4
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CRYSTAL STRUCTURE OF PHOSPHOLIPASE D FROM STREPTOMYCES ANTIBIOTICUS
Descriptor:Phospholipase D, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Suzuki, A., Kakuno, K., Saito, R., Iwasaki, Y., Yamane, T., Yamane, T.
Deposit date:2007-12-05
Release date:2007-12-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of phospholipase D from streptomyces antibioticus
To be Published
2ZE9
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CRYSTAL STRUCTURE OF H168A MUTANT OF PHOSPHOLIPASE D FROM STREPTOMYCES ANTIBIOTICUS, AS A COMPLEX WITH PHOSPHATIDYLCHOLINE
Descriptor:Phospholipase D, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, (2R)-3-(phosphonooxy)propane-1,2-diyl diheptanoate
Authors:Suzuki, A., Toda, H., Iwasaki, Y., Yamane, T., Yamane, T.
Deposit date:2007-12-06
Release date:2007-12-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of phospholipase D from streptomyces antibioticus
To be Published
1CYC
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THE CRYSTAL STRUCTURE OF BONITO (KATSUO) FERROCYTOCHROME C AT 2.3 ANGSTROMS RESOLUTION. II. STRUCTURE AND FUNCTION
Descriptor:FERROCYTOCHROME C, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tanaka, N., Yamane, T., Tsukihara, T., Ashida, T., Kakudo, M.
Deposit date:1976-08-01
Release date:1976-10-06
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of bonito (katsuo) ferrocytochrome c at 2.3 A resolution. II. Structure and function.
J.Biochem.(Tokyo), 77, 1975
1J3F
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CRYSTAL STRUCTURE OF AN ARTIFICIAL METALLOPROTEIN:CR(III)(3,3'-ME2-SALOPHEN)/APO-A71G MYOGLOBIN
Descriptor:Myoglobin, CHROMIUM ION, PHOSPHATE ION, ...
Authors:Koshiyama, T., Kono, M., Ohashi, M., Ueno, T., Suzuki, A., Yamane, T., Watanabe, Y.
Deposit date:2003-01-24
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Coordinated Design of Cofactor and Active Site Structures in Development of New Protein Catalysts
J.Am.Chem.Soc., 127, 2005
1TAB
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STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN
Descriptor:TRYPSIN, BOWMAN-BIRK TYPE PROTEINASE INHIBITOR
Authors:Tsunogae, Y., Tanaka, I., Yamane, T., Kikkawa, J.-I., Ashida, T., Ishikawa, C., Watanabe, K., Nakamura, S., Takahashi, K.
Deposit date:1990-10-15
Release date:1992-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin.
J.Biochem.(Tokyo), 100, 1986
1CH4
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MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA (F133V)
Descriptor:MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA, PROTOPORPHYRIN IX CONTAINING FE, CARBON MONOXIDE
Authors:Shirai, T., Fujikake, M., Yamane, T., Inaba, K., Ishimori, K., Morishima, I.
Deposit date:1998-06-11
Release date:1999-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a protein with an artificial exon-shuffling, module M4-substituted chimera hemoglobin beta alpha, at 2.5 A resolution.
J.Mol.Biol., 287, 1999
1VDP
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THE CRYSTAL STRUCTURE OF THE MONOCLINIC FORM OF HEN EGG WHITE LYSOZYME AT 1.7 ANGSTROMS RESOLUTION IN SPACE
Descriptor:Lysozyme C
Authors:Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M.
Deposit date:2004-03-24
Release date:2004-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space
to be published
1VDQ
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THE CRYSTAL STRUCTURE OF THE ORTHORHOMBIC FORM OF HEN EGG WHITE LYSOZYME AT 1.5 ANGSTROMS RESOLUTION
Descriptor:Lysozyme C
Authors:Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M.
Deposit date:2004-03-24
Release date:2004-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.5 angstroms resolution
to be published
1VDS
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THE CRYSTAL STRUCTURE OF THE TETRAGONAL FORM OF HEN EGG WHITE LYSOZYME AT 1.6 ANGSTROMS RESOLUTION IN SPACE
Descriptor:Lysozyme C
Authors:Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M.
Deposit date:2004-03-24
Release date:2004-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of the tetragonal form of hen egg white lysozyme at 1.6 angstroms resolution in space
to be published
1VDT
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THE CRYSTAL STRUCTURE OF THE TETRAGONAL FORM OF HEN EGG WHITE LYSOZYME AT 1.7 ANGSTROMS RESOLUTION UNDER BASIC CONDITIONS IN SPACE
Descriptor:Lysozyme C
Authors:Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M.
Deposit date:2004-03-24
Release date:2004-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of the tetragonal form of hen egg white lysozyme at 1.7 angstroms resolution under basic conditions in space
to be published
1VED
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THE CRYSTAL STRUCTURE OF THE ORTHORHOMBIC FORM OF HEN EGG WHITE LYSOZYME AT 1.9 ANGSTROMS RESOLUTION IN SPACE
Descriptor:Lysozyme C
Authors:Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M.
Deposit date:2004-03-30
Release date:2004-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.9 angstroms resolution in space
To be Published
3A57
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CRYSTAL STRUCTURE OF THERMOSTABLE DIRECT HEMOLYSIN
Descriptor:Thermostable direct hemolysin 2
Authors:Hashimoto, H., Yanagihara, I., Nakahira, K., Hamada, D., Ikegami, T., Mayanagi, K., Kaieda, S., Fukui, T., Ohnishi, K., Kajiyama, S., Yamane, T., Ikeguchi, M., Honda, T., Shimizu, T., Sato, M.
Deposit date:2009-08-03
Release date:2010-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin
J.Biol.Chem., 285, 2010
1C1F
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LIGAND-FREE CONGERIN I
Descriptor:PROTEIN (CONGERIN I)
Authors:Shirai, T., Mitsuyama, C., Niwa, Y., Matsui, Y., Hotta, H., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:1999-03-03
Release date:1999-10-08
Last modified:2016-04-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
1C1L
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LACTOSE-LIGANDED CONGERIN I
Descriptor:PROTEIN (CONGERIN I), BETA-D-GALACTOSE, BETA-D-GLUCOSE
Authors:Shirai, T., Mitsuyama, C., Niwa, Y., Matsui, Y., Hotta, H., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:1999-03-03
Release date:1999-10-08
Last modified:2016-04-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
1IS3
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LACTOSE AND MES-LIGANDED CONGERIN II
Descriptor:CONGERIN II, BETA-LACTOSE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:2001-11-12
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1IS4
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LACTOSE-LIGANDED CONGERIN II
Descriptor:CONGERIN II, BETA-LACTOSE
Authors:Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:2001-11-12
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of a Conger Eel Galectin (Congerin II) at 1.45 A Resolution: Implication for the Accelerated Evolution of a New Ligand-Binding Site Following Gene Duplication
J.Mol.Biol., 321, 2002
1IS5
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LIGAND FREE CONGERIN II
Descriptor:Congerin II
Authors:Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:2001-11-12
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1IS6
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MES-LIGANDED CONGERIN II
Descriptor:Congerin II, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:2001-11-12
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1V9Q
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CRYSTAL STRUCTURE OF AN ARTIFICIAL METALLOPROTEIN:MN(III)(3,3'-ME2-SALOPHEN)/APO-A71G MYOGLOBIN
Descriptor:Myoglobin, PHOSPHATE ION, 'N,N'-BIS-(2-HYDROXY-3-METHYL-BENZYLIDENE)-BENZENE-1,2-DIAMINE', ...
Authors:Ueno, T., Koshiyama, T., Kono, M., Kondo, K., Ohashi, M., Suzuki, A., Yamane, T., Watanabe, Y.
Deposit date:2004-01-29
Release date:2005-05-17
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Coordinated Design of Cofactor and Active Site Structures in Development of New Protein Catalysts
J.Am.Chem.Soc., 127, 2005
1WSD
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ALKALINE M-PROTEASE FORM I CRYSTAL STRCUTURE
Descriptor:M-protease, CALCIUM ION, SULFATE ION
Authors:Shirai, T., Suzuki, A., Yamane, T., Ashida, T., Kobayashi, T., Hitomi, J., Ito, S.
Deposit date:2004-11-05
Release date:2004-11-16
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism
Protein Eng., 10, 1997
2D1I
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STRUCTURE OF HUMAN ATG4B
Descriptor:Cysteine protease APG4B
Authors:Kumanomidou, T., Mizushima, T., Komatsu, M., Suzuki, A., Tanida, I., Sou, Y.S., Ueno, T., Kominami, E., Tanaka, K., Yamane, T.
Deposit date:2005-08-24
Release date:2006-01-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of Human Atg4b, a Processing and De-conjugating Enzyme for Autophagosome-forming Modifiers
J.Mol.Biol., 355, 2006
2E31
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STRUCTURAL BASIS FOR SELECTION OF GLYCOSYLATED SUBSTRATE BY SCFFBS1 UBIQUITIN LIGASE
Descriptor:F-box only protein 2, S-phase kinase-associated protein 1A
Authors:Mizushima, T., Yoshida, Y., Kumanomidou, T., Hasegawa, Y., Yamane, T., Tanaka, K.
Deposit date:2006-11-20
Release date:2007-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007