Author results

3P9T
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SMET-TRICLOSAN COMPLEX
Descriptor:Repressor, SULFATE ION, TRICLOSAN
Authors:Hernandez, A., Ruiz, F.M., Romero, A., Martinez, J.L.
Deposit date:2010-10-18
Release date:2011-08-10
Last modified:2011-09-21
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:The Binding of Triclosan to SmeT, the Repressor of the Multidrug Efflux Pump SmeDEF, Induces Antibiotic Resistance in Stenotrophomonas maltophilia.
Plos Pathog., 7, 2011
2W53
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STRUCTURE OF SMET, THE REPRESSOR OF THE STENOTROPHOMONAS MALTOPHILIA MULTIDRUG EFFLUX PUMP SMEDEF.
Descriptor:REPRESSOR, SULFATE ION
Authors:Mate, M.J., Romero, A., Hernandez, A., Martinez, J.L.
Deposit date:2008-12-04
Release date:2009-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Functional Analysis of Smet, the Repressor of the Stenotrophomonas Maltophilia Multidrug Efflux Pump Smedef.
J.Biol.Chem., 284, 2009
6UTM
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NATIVE E. COLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE
Descriptor:Glyceraldehyde-3-phosphate dehydrogenase, SN-GLYCEROL-3-PHOSPHATE, SODIUM ION, ...
Authors:Rodriguez-Hernandez, A., Romo-Arevalo, E., Rodriguez-Romero, A.
Deposit date:2019-10-29
Release date:2019-12-11
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:A Novel Substrate-Binding Site in the X-Ray Structure of an Oxidized E. coli Glyceraldehyde 3-Phosphate Dehydrogenase Elucidated by Single-Wavelength Anomalous Dispersion
Crystals, 9, 2019
6UTN
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NATIVE E. COLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE
Descriptor:Glyceraldehyde-3-phosphate dehydrogenase, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose, SN-GLYCEROL-3-PHOSPHATE, ...
Authors:Rodriguez-Hernandez, A., Romo-Arevalo, E., Rodriguez-Romero, A.
Deposit date:2019-10-29
Release date:2019-12-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:A Novel Substrate-Binding Site in the X-Ray Structure of an Oxidized E. coli Glyceraldehyde 3-Phosphate Dehydrogenase Elucidated by Single-Wavelength Anomalous Dispersion
Crystals, 9, 2019
6UTO
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NATIVE E. COLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE
Descriptor:Glyceraldehyde-3-phosphate dehydrogenase, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose, SODIUM ION, ...
Authors:Rodriguez-Hernandez, A., Romo-Arevalo, E., Rodriguez-Romero, A.
Deposit date:2019-10-29
Release date:2019-12-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:A Novel Substrate-Binding Site in the X-Ray Structure of an Oxidized E. coli Glyceraldehyde 3-Phosphate Dehydrogenase Elucidated by Single-Wavelength Anomalous Dispersion
Crystals, 9, 2019
6VPB
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A NOVEL MEMBRANE-BOUND 6-PHOSPHOGLUCONATE DEHYDROGENASE FROM THE ACETIC ACID BACTERIA GLUCONACETOBACTER DIAZOTROPHICUS (GD6PGD)
Descriptor:6-phosphogluconate dehydrogenase, DI(HYDROXYETHYL)ETHER, ISOPROPYL ALCOHOL, ...
Authors:Rodriguez-Romero, A., Rodriguez-Hernandez, A.
Deposit date:2020-02-02
Release date:2020-07-22
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:The structure of a novel membrane-associated 6-phosphogluconate dehydrogenase from Gluconacetobacter diazotrophicus (Gd6PGD) reveals a subfamily of short-chain 6PGDs.
Febs J., 2020
6XDG
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COMPLEX OF SARS-COV-2 RECEPTOR BINDING DOMAIN WITH THE FAB FRAGMENTS OF TWO NEUTRALIZING ANTIBODIES
Descriptor:Spike glycoprotein, REGN10933 antibody Fab fragment light chain, REGN10933 antibody Fab fragment heavy chain, ...
Authors:Franklin, M.C., Saotome, K., Romero Hernandez, A., Zhou, Y.
Deposit date:2020-06-10
Release date:2020-06-24
Last modified:2020-09-02
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Studies in humanized mice and convalescent humans yield a SARS-CoV-2 antibody cocktail.
Science, 369, 2020
4JXX
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CRYSTAL STRUCTURE OF E COLI E. COLI GLUTAMINYL-TRNA SYNTHETASE BOUND TO TRNA(GLN)(CUG) AND ATP FROM NOVEL CRYOSTABILIZATION CONDITIONS
Descriptor:Glutamine--tRNA ligase, RNA (71-MER), ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Perona, J.J., Rodriguez-Hernandez, A.
Deposit date:2013-03-28
Release date:2013-05-01
Last modified:2013-10-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position.
J.Mol.Biol., 425, 2013
4JXZ
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STRUCTURE OF E. COLI GLUTAMINYL-TRNA SYNTHETASE BOUND TO ATP AND A TRNA(GLN) ACCEPTOR CONTAINING A UUG ANTICODON
Descriptor:Glutamine--tRNA ligase, RNA (71-MER), ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Perona, J.J., Rodriguez-Hernandez, A.
Deposit date:2013-03-28
Release date:2013-05-01
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position.
J.Mol.Biol., 425, 2013
4JYZ
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CRYSTAL STRUCTURE OF E. COLI GLUTAMINYL-TRNA SYNTHETASE BOUND TO ATP AND NATIVE TRNA(GLN) CONTAINING THE CMNM5S2U34 ANTICODON WOBBLE BASE
Descriptor:Glutamine--tRNA ligase, RNA (72-MER), ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Perona, J.J., Rodriguez-Hernandez, A.
Deposit date:2013-04-01
Release date:2013-05-29
Last modified:2013-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position.
J.Mol.Biol., 425, 2013
5TPW
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CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAINS OF THE NMDA RECEPTOR SUBUNIT GLUN1 AND GLUN2A IN COMPLEX WITH ZINC AT THE GLUN2A
Descriptor:NMDA glutamate receptor subunit, Glutamate receptor ionotropic, NMDA 2A, ...
Authors:Romero-Hernandez, A., Simorowski, N., Karakas, E., Furukawa, H.
Deposit date:2016-10-21
Release date:2016-12-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.909 Å)
Cite:Molecular Basis for Subtype Specificity and High-Affinity Zinc Inhibition in the GluN1-GluN2A NMDA Receptor Amino-Terminal Domain.
Neuron, 92, 2016
5TPZ
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CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAINS OF THE NMDA RECEPTOR SUBUNIT GLUN1 AND GLUN2B IN APO CLOSED STATE
Descriptor:NMDA glutamate receptor subunit, Glutamate receptor ionotropic, NMDA 2B, ...
Authors:Romero-Hernandez, A., Simorwski, N., Karakas, E., Furukawa, H.
Deposit date:2016-10-21
Release date:2016-12-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.095 Å)
Cite:Molecular Basis for Subtype Specificity and High-Affinity Zinc Inhibition in the GluN1-GluN2A NMDA Receptor Amino-Terminal Domain.
Neuron, 92, 2016
5TQ0
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CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAINS OF THE NMDA RECEPTOR SUBUNIT GLUN1 AND GLUN2A IN THE PRESENCE OF EDTA
Descriptor:NMDA glutamate receptor subunit, Glutamate receptor ionotropic, NMDA 2A, ...
Authors:Romero-Hernandez, A., Simorowski, N., Karakas, E., Furukawa, H.
Deposit date:2016-10-21
Release date:2016-12-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular Basis for Subtype Specificity and High-Affinity Zinc Inhibition in the GluN1-GluN2A NMDA Receptor Amino-Terminal Domain.
Neuron, 92, 2016
5TQ2
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CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAINS OF THE NMDA RECEPTOR SUBUNIT GLUN1 AND GLUN2A IN COMPLEX WITH ZINC AT GLUN1 AND GLUN2A
Descriptor:NMDA glutamate receptor subunit, Glutamate receptor ionotropic, NMDA 2A, ...
Authors:Romero-Hernandez, A., Simorowski, N., Karakas, E., Furukawa, H.
Deposit date:2016-10-21
Release date:2016-12-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.289 Å)
Cite:Molecular Basis for Subtype Specificity and High-Affinity Zinc Inhibition in the GluN1-GluN2A NMDA Receptor Amino-Terminal Domain.
Neuron, 92, 2016
5U8C
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CRYSTAL STRUCTURE OF GLUN1/GLUN2A LIGAND-BINDING DOMAIN IN COMPLEX WITH GLYCINE AND NVP-AAM077
Descriptor:Glutamate receptor ionotropic, NMDA 1, GLUTAMATE RECEPTOR IONOTROPIC, ...
Authors:Romero-Hernandez, A., Furukawa, H.
Deposit date:2016-12-14
Release date:2017-05-17
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:Novel Mode of Antagonist Binding in NMDA Receptors Revealed by the Crystal Structure of the GluN1-GluN2A Ligand-Binding Domain Complexed to NVP-AAM077.
Mol. Pharmacol., 92, 2017
6USU
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CRYSTAL STRUCTURE OF GLUN1/GLUN2A LIGAND-BINDING DOMAIN IN COMPLEX WITH L689,560 AND GLUTAMATE
Descriptor:Glutamate receptor ionotropic, NMDA 1, NMDA 2A, ...
Authors:Romero-Hernandez, A., Tajima, N., Chou, T., Furukawa, H.
Deposit date:2019-10-28
Release date:2020-07-15
Last modified:2020-08-05
Method:X-RAY DIFFRACTION (2.092 Å)
Cite:Structural Basis of Functional Transitions in Mammalian NMDA Receptors.
Cell, 182, 2020
6USV
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CRYSTAL STRUCTURE OF GLUN1/GLUN2A LIGAND-BINDING DOMAIN IN COMPLEX WITH GLYCINE AND SDZ 220-040
Descriptor:Glutamate receptor ionotropic, NMDA 1, NMDA 2A, ...
Authors:Romero-Hernandez, A., Tajima, N., Chou, T., Furukawa, h.
Deposit date:2019-10-28
Release date:2020-07-15
Last modified:2020-08-05
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Structural Basis of Functional Transitions in Mammalian NMDA Receptors.
Cell, 182, 2020
4BY4
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CRYSTAL STRUCTURE OF DROSOPHILA FRQ2
Descriptor:FI18190P1, CALCIUM ION, SODIUM ION
Authors:Banos-Mateos, S., Chaves-Sanjuan, A., Sanchez-Barrena, M.J.
Deposit date:2013-07-17
Release date:2014-08-13
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Guanine-Exchange Factor Ric8A Binds to the Ca2+ Sensor Ncs-1 to Regulate Synapse Number and Neurotransmitter Release.
J.Cell.Sci., 127, 2014
4BY5
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CRYSTAL STRUCTURE OF DROSOPHILA FRQ2
Descriptor:FI18190P1, CALCIUM ION, SODIUM ION
Authors:Banos-Mateos, S., Chaves-Sanjuan, A., Sanchez-Barrena, M.J.
Deposit date:2013-07-17
Release date:2014-08-13
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:The Guanine-Exchange Factor Ric8A Binds the Calcium Sensor Ncs-1 to Regulate Synapse Number and Probability of Release.
J.Cell.Sci., 127, 2014
6MKU
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CRYSTAL STRUCTURE OF THE PERIPLASMIC LYSINE-, ARGININE-, ORNITHINE-BINDING PROTEIN (LAO) D11A MUTANT FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH ARGININE
Descriptor:Lysine/arginine/ornithine-binding periplasmic protein, ARGININE, ACETATE ION, ...
Authors:Romero-Romero, S., Vergara, R., Espinoza-Perez, G., Rodriguez-Romero, A.
Deposit date:2018-09-26
Release date:2019-08-07
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.727 Å)
Cite:The interplay of protein-ligand and water-mediated interactions shape affinity and selectivity in the LAO binding protein.
Febs J., 287, 2020
6MKW
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CRYSTAL STRUCTURE OF THE PERIPLASMIC LYSINE-, ARGININE-, ORNITHINE-BINDING PROTEIN (LAO) D11A MUTANT FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH HISTIDINE
Descriptor:Lysine/arginine/ornithine transport protein, HISTIDINE, GLYCEROL
Authors:Romero-Romero, S., Vergara, R., Espinoza-Perez, G., Rodriguez-Romero, A.
Deposit date:2018-09-26
Release date:2019-08-07
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:The interplay of protein-ligand and water-mediated interactions shape affinity and selectivity in the LAO binding protein.
Febs J., 287, 2020
6MKX
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CRYSTAL STRUCTURE OF THE PERIPLASMIC LYSINE-, ARGININE-, ORNITHINE-BINDING PROTEIN (LAO) R77A MUTANT FROM SALMONELLA TYPHIMURIUM
Descriptor:Lysine/arginine/ornithine-binding periplasmic protein
Authors:Romero-Romero, S., Vergara, R., Espinoza-Perez, G., Rodriguez-Romero, A.
Deposit date:2018-09-26
Release date:2019-08-07
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.284 Å)
Cite:The interplay of protein-ligand and water-mediated interactions shape affinity and selectivity in the LAO binding protein.
Febs J., 287, 2020
6ML0
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CRYSTAL STRUCTURE OF THE PERIPLASMIC LYSINE-, ARGININE-, ORNITHINE-BINDING PROTEIN (LAO) S69A MUTANT FROM SALMONELLA TYPHIMURIUM
Descriptor:Lysine/arginine/ornithine-binding periplasmic protein, ACETATE ION, GLYCEROL
Authors:Romero-Romero, S., Vergara, R., Espinoza-Perez, G., Rodriguez-Romero, A.
Deposit date:2018-09-26
Release date:2019-08-07
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:The interplay of protein-ligand and water-mediated interactions shape affinity and selectivity in the LAO binding protein.
Febs J., 287, 2020
6ML9
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CRYSTAL STRUCTURE OF THE PERIPLASMIC LYSINE-, ARGININE-, ORNITHINE-BINDING PROTEIN (LAO) D30A MUTANT FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH ARGININE
Descriptor:Lysine/arginine/ornithine-binding periplasmic protein, ARGININE, ACETATE ION, ...
Authors:Romero-Romero, S., Vergara, R., Espinoza-Perez, G., Rodriguez-Romero, A.
Deposit date:2018-09-27
Release date:2019-08-07
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.687 Å)
Cite:The interplay of protein-ligand and water-mediated interactions shape affinity and selectivity in the LAO binding protein.
Febs J., 287, 2020
6MLA
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CRYSTAL STRUCTURE OF THE PERIPLASMIC LYSINE-, ARGININE-, ORNITHINE-BINDING PROTEIN (LAO) D161A MUTANT FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH ARGININE
Descriptor:Lysine/arginine/ornithine-binding periplasmic protein, ARGININE, ACETATE ION, ...
Authors:Romero-Romero, S., Vergara, R., Espinoza-Perez, G., Rodriguez-Romero, A.
Deposit date:2018-09-27
Release date:2019-08-07
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.582 Å)
Cite:The interplay of protein-ligand and water-mediated interactions shape affinity and selectivity in the LAO binding protein.
Febs J., 287, 2020
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PDB entries from 2020-11-25