Author results

2OB7
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STRUCTURE OF TMRNA-(SMPB)2 COMPLEX AS INFERRED FROM CRYO-EM
Descriptor:transfer-messenger RNA, 16S ribosomal RNA, SsrA-binding protein
Authors:Frank, J., Felden, B., Gillet, R., Li, W.
Deposit date:2006-12-18
Release date:2007-01-23
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (13.6 Å)
Cite:Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1.
J.Biol.Chem., 282, 2007
3EP2
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MODEL OF PHE-TRNA(PHE) IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM
Descriptor:Elongation factor Tu, 30S ribosomal protein S12, 50S ribosomal protein L11, ...
Authors:Frank, J., Li, W., Agirrezabala, X.
Deposit date:2008-09-29
Release date:2008-12-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM.
Embo J., 27, 2008
2Z9Q
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TRANSFER RNA IN THE HYBRID P/E STATE
Descriptor:tRNA
Authors:Frank, J., Li, W.
Deposit date:2007-09-25
Release date:2007-10-16
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Transfer RNA in the hybrid P/E state
To be Published
3EQ3
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MODEL OF TRNA(TRP)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM
Descriptor:Elongation factor Tu, 30S ribosomal protein S12, 50S ribosomal protein L11, ...
Authors:Frank, J., Li, W., Agirrezabala, X.
Deposit date:2008-09-30
Release date:2008-12-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM.
Embo J., 27, 2008
3EQ4
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MODEL OF TRNA(LEU)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM
Descriptor:Elongation factor Tu, 30S ribosomal protein S12, 50S ribosomal protein L11, ...
Authors:Frank, J., Li, W., Agirrezabala, X.
Deposit date:2008-09-30
Release date:2008-12-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM.
Embo J., 27, 2008
6O7K
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30S INITIATION COMPLEX
Descriptor:Translation initiation factor IF-1, Translation initiation factor IF-2, 16S ribosomal RNA, ...
Authors:Frank, J., Gonzalez Jr., R.L., kaledhonkar, S., Fu, Z., Caban, K., Li, W., Chen, B., Sun, M.
Deposit date:2019-03-08
Release date:2019-05-29
Last modified:2020-01-29
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Late steps in bacterial translation initiation visualized using time-resolved cryo-EM.
Nature, 570, 2019
6O9J
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70S ELONGATION COMPETENT RIBOSOME
Descriptor:5S rRNA, 23S rRNA, 50S ribosomal protein L25, ...
Authors:Frank, J., Gonzalez Jr., R.L., Kaledhonkar, S., Fu, Z., Caban, K., Li, W., Chen, B., Sun, M.
Deposit date:2019-03-14
Release date:2019-05-29
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Late steps in bacterial translation initiation visualized using time-resolved cryo-EM.
Nature, 570, 2019
6O9K
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70S INITIATION COMPLEX
Descriptor:16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Frank, J., Gonzalez Jr., R.L., kaledhonkar, S., Fu, Z., Caban, K., Li, W., Chen, B., Sun, M.
Deposit date:2019-03-14
Release date:2019-05-29
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Late steps in bacterial translation initiation visualized using time-resolved cryo-EM.
Nature, 570, 2019
4V4V
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STRUCTURE OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1056
Descriptor:16S ribosomal RNA, tRNA, 30S ribosomal subunit protein S2, ...
Authors:Mitra, K., Frank, J.
Deposit date:2006-05-09
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (15 Å)
Cite:Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
Mol.Cell, 22, 2006
4V4W
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STRUCTURE OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143
Descriptor:16S ribosomal RNA, tRNA, 30S ribosomal subunit protein S2, ...
Authors:Mitra, K., Frank, J.
Deposit date:2006-05-09
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (15 Å)
Cite:Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
Mol.Cell, 22, 2006
1JQT
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FITTING OF L11 PROTEIN IN THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME
Descriptor:50S Ribosomal protein L11
Authors:Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
Deposit date:2001-08-07
Release date:2001-09-07
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1ZN1
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COORDINATES OF RRF FITTED INTO CRYO-EM MAP OF THE 70S POST-TERMINATION COMPLEX
Descriptor:ribosomal 23S RNA, ribosomal 16S RNA, Ribosome recycling factor, ...
Authors:Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2018-01-31
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
4V47
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REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE EF-G.GTP STATE OF E. COLI 70S RIBOSOME
Descriptor:23S ribosomal RNA, 5S ribosomal RNA, 50S ribosomal protein L2, ...
Authors:Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
Deposit date:2003-05-06
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (12.3 Å)
Cite:Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
4V48
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REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE INITIATION-LIKE STATE OF E. COLI 70S RIBOSOME
Descriptor:23S ribosomal RNA, 5S ribosomal RNA, tRNA-PHE, ...
Authors:Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
Deposit date:2003-05-06
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
4V69
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TERNARY COMPLEX-BOUND E.COLI 70S RIBOSOME.
Descriptor:30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Villa, E., Sengupta, J., Trabuco, L.G., LeBarron, J., Baxter, W.T., Shaikh, T.R., Grassucci, R.A., Nissen, P., Ehrenberg, M., Schulten, K., Frank, J.
Deposit date:2008-12-11
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis
Proc.Natl.Acad.Sci.USA, 106, 2009
1JQM
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FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (EF-G) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G, GDP AND FUSIDIC ACID
Descriptor:50S Ribosomal protein L11, Elongation Factor G
Authors:Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
Deposit date:2001-08-07
Release date:2001-09-07
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1JQS
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FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (DOMAIN G' AND V) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G AND GMPPCP, A NONHYDROLYSABLE GTP ANALOG
Descriptor:50S Ribosomal protein L11, Elongation Factor G
Authors:Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
Deposit date:2001-08-07
Release date:2001-09-07
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1ZC8
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COORDINATES OF TMRNA, SMPB, EF-TU AND H44 FITTED INTO CRYO-EM MAP OF THE 70S RIBOSOME AND TMRNA COMPLEX
Descriptor:TLD 16S ribosomal RNA, H2 16S rRNA, H2b d mRNA, ...
Authors:Valle, M., Gillet, R., Kaur, S., Henne, A., Ramakrishnan, V., Frank, J.
Deposit date:2005-04-11
Release date:2005-04-19
Last modified:2013-12-11
Method:ELECTRON MICROSCOPY (13 Å)
Cite:Visualizing tmRNA Entry into a Stalled Ribosome
Science, 300, 2003
1ZN0
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COORDINATES OF RRF AND EF-G FITTED INTO CRYO-EM MAP OF THE 50S SUBUNIT BOUND WITH BOTH EF-G (GDPNP) AND RRF
Descriptor:16S RIBOSOMAL RNA, Ribosome recycling factor, ELONGATION FACTOR G
Authors:Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (15.5 Å)
Cite:Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
4V4B
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STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP.
Descriptor:18S ribosomal RNA, Elongation factor 2, 40S ribosomal protein S0-A, ...
Authors:Spahn, C.M., Gomez-Lorenzo, M.G., Grassucci, R.A., Jorgensen, R., Andersen, G.R., Beckmann, R., Penczek, P.A., Ballesta, J.P.G., Frank, J.
Deposit date:2004-01-06
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.
Embo J., 23, 2004
2RDO
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50S SUBUNIT WITH EF-G(GDPNP) AND RRF BOUND
Descriptor:5S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 50S ribosomal protein L25, ...
Authors:Gao, N., Zavialov, A.V., Ehrenberg, M., Frank, J.
Deposit date:2007-09-24
Release date:2008-03-04
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9.1 Å)
Cite:Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.
J.Mol.Biol., 374, 2007
6PV6
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FUNCTIONAL PATHWAYS OF BIOMOLECULES RETRIEVED FROM SINGLE-PARTICLE SNAPSHOTS
Descriptor:Ryanodine receptor 1, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ...
Authors:Dashti, A., des Georges, A., Frank, J., Ourmazd, A.
Deposit date:2019-07-19
Release date:2020-08-12
Last modified:2020-10-07
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Retrieving functional pathways of biomolecules from single-particle snapshots.
Nat Commun, 11, 2020
7JMF
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FUNCTIONAL PATHWAYS OF BIOMOLECULES RETRIEVED FROM SINGLE-PARTICLE SNAPSHOTS - FRAME 42 - STATE 6 (S6)
Descriptor:Peptidyl-prolyl cis-trans isomerase FKBP1B, ryanodine receptor 1, ZINC ION, ...
Authors:Dashti, A., des Georges, A., Frank, J., Ourmazd, A.
Deposit date:2020-07-31
Release date:2020-08-12
Last modified:2020-10-07
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Retrieving functional pathways of biomolecules from single-particle snapshots.
Nat Commun, 11, 2020
7JMG
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FUNCTIONAL PATHWAYS OF BIOMOLECULES RETRIEVED FROM SINGLE-PARTICLE SNAPSHOTS - FRAME 22 - STATE 2 (S2)
Descriptor:ryanodine receptor type 1, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ...
Authors:Dashti, A., des Georges, A., Frank, J., Ourmazd, A.
Deposit date:2020-07-31
Release date:2020-08-12
Last modified:2020-10-07
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Retrieving functional pathways of biomolecules from single-particle snapshots.
Nat Commun, 11, 2020
7JMH
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FUNCTIONAL PATHWAYS OF BIOMOLECULES RETRIEVED FROM SINGLE-PARTICLE SNAPSHOTS - FRAME 35 - STATE 4 (S4)
Descriptor:Peptidyl-prolyl cis-trans isomerase FKBP1B, ryanodine receptor type 1, ZINC ION, ...
Authors:Dashti, A., des Georges, A., Frank, J., Ourmazd, A.
Deposit date:2020-07-31
Release date:2020-08-12
Last modified:2020-10-07
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Retrieving functional pathways of biomolecules from single-particle snapshots.
Nat Commun, 11, 2020
171313
PDB entries from 2020-11-18