Author results

6J7C
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CRYSTAL STRUCTURE OF PROLINE RACEMASE-LIKE PROTEIN FROM THERMOCOCCUS LITORALIS IN COMPLEX WITH PROLINE
Descriptor:Proline racemase, PROLINE
Authors:Watanabe, Y., Watanabe, S., Itoh, Y., Watanabe, Y.
Deposit date:2019-01-17
Release date:2019-02-27
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon.
Biochem. Biophys. Res. Commun., 511, 2019
6JNJ
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-ARABINOSE 1-DEHYDROGENASE (APO-FORM)
Descriptor:L-arabinose 1-dehydrogenase (NAD(P)(+)), PHOSPHATE ION
Authors:Watanabe, Y., Iga, C., Watanabe, S.
Deposit date:2019-03-16
Release date:2019-05-15
Last modified:2019-06-26
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
6JNK
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-ARABINOSE 1-DEHYDROGENASE (NADP-BOUND FORM)
Descriptor:L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Watanabe, Y., Iga, C., Watanabe, S.
Deposit date:2019-03-16
Release date:2019-05-15
Last modified:2019-06-26
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
6L06
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHOSPHATIDYLSERINE DECARBOXYLASE (APO-FORM)
Descriptor:Phosphatidylserine decarboxylase beta chain, Phosphatidylserine decarboxylase alpha chain
Authors:Watanabe, Y., Watanabe, S.
Deposit date:2019-09-26
Release date:2020-04-15
Last modified:2020-07-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
6L07
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHOSPHATIDYLSERINE DECARBOXYLASE (PE-BOUND FORM)
Descriptor:Phosphatidylserine decarboxylase beta chain, Phosphatidylserine decarboxylase alpha chain, 2-azaniumylethyl (2R)-2,3-bis{[(9Z)-octadec-9-enoyl]oxy}propyl phosphate
Authors:Watanabe, Y., Watanabe, S.
Deposit date:2019-09-26
Release date:2020-04-15
Last modified:2020-07-22
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
7BYU
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CRYSTAL STRUCTURE OF ACIDOVORAX AVENAE L-FUCOSE MUTAROTASE (APO FORM)
Descriptor:L-fucose mutarotase, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, 1,2-ETHANEDIOL
Authors:Watanabe, Y., Fukui, Y., Watanabe, S.
Deposit date:2020-04-24
Release date:2020-05-27
Last modified:2020-06-24
Method:X-RAY DIFFRACTION (2.206 Å)
Cite:Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.
Biochem.Biophys.Res.Commun., 528, 2020
7BYW
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CRYSTAL STRUCTURE OF ACIDOVORAX AVENAE L-FUCOSE MUTAROTASE (L-FUCOSE-BOUND FORM)
Descriptor:L-fucose mutarotase, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, alpha-L-fucopyranose
Authors:Watanabe, Y., Watanabe, S.
Deposit date:2020-04-24
Release date:2020-05-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.
Biochem.Biophys.Res.Commun., 528, 2020
6K9Y
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CRYSTAL STRUCTURE OF HUMAN VAT-1
Descriptor:Synaptic vesicle membrane protein VAT-1 homolog, NITRATE ION
Authors:Watanabe, Y., Endo, T.
Deposit date:2019-06-19
Release date:2020-02-12
Last modified:2020-03-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for interorganelle phospholipid transport mediated by VAT-1.
J.Biol.Chem., 295, 2020
2KZB
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SOLUTION STRUCTURE OF ALPHA-MANNOSIDASE BINDING DOMAIN OF ATG19
Descriptor:Autophagy-related protein 19
Authors:Watanabe, Y., Noda, N., Kumeta, H., Suzuki, K., Ohsumi, Y., Inagaki, F.
Deposit date:2010-06-15
Release date:2010-07-21
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34.
J.Biol.Chem., 285, 2010
2KZK
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SOLUTION STRUCTURE OF ALPHA-MANNOSIDASE BINDING DOMAIN OF ATG34
Descriptor:Uncharacterized protein YOL083W
Authors:Watanabe, Y., Noda, N., Kumeta, H., Suzuki, K., Ohsumi, Y., Inagaki, F.
Deposit date:2010-06-18
Release date:2010-07-21
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34.
J.Biol.Chem., 285, 2010
4YTV
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CRYSTAL STRUCTURE OF MDM35
Descriptor:Mitochondrial distribution and morphology protein 35, GLYCEROL, COBALT (II) ION
Authors:Watanabe, Y., Tamura, Y., Kawano, S., Endo, T.
Deposit date:2015-03-18
Release date:2015-08-12
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
4YTW
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CRYSTAL STRUCTURE OF UPS1-MDM35 COMPLEX
Descriptor:Mitochondrial distribution and morphology protein 35, Protein UPS1, mitochondrial
Authors:Watanabe, Y., Tamura, Y., Kawano, S., Endo, T.
Deposit date:2015-03-18
Release date:2015-08-12
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
4YTX
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CRYSTAL STRUCTURE OF UPS1-MDM35 COMPLEX WITH PA
Descriptor:Mitochondrial distribution and morphology protein 35, Protein UPS1, mitochondrial, ...
Authors:Watanabe, Y., Tamura, Y., Kawano, S., Endo, T.
Deposit date:2015-03-18
Release date:2015-08-12
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
3VU4
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CRYSTAL STRUCTURE OF KLUYVELOMYCES MARXIANUS HSV2
Descriptor:KmHsv2, SULFATE ION
Authors:Watanabe, Y., Noda, N.N.
Deposit date:2012-06-15
Release date:2012-07-04
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-based analyses reveal distinct binding sites for Atg2 and phosphoinositides in Atg18.
J.Biol.Chem., 287, 2012
5AUJ
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PYROCOCCUS FURIOSUS PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) SEMET DERIVATIVE
Descriptor:DNA polymerase sliding clamp
Authors:Watanabe, Y., Oyama, T.
Deposit date:2015-04-21
Release date:2016-04-27
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Pyrococcus furiosus proliferating cell nuclear antigen (PCNA) SeMet derivative
To Be Published
7C0C
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-2-KETO-3-DEOXYARABONATE DEHYDRATASE (APO FORM)
Descriptor:L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y., Nobuchi, R., Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Last modified:2020-09-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0D
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-2-KETO-3-DEOXYARABONATE DEHYDRATASE (HYDROXYPYRUVATE-BOUND FORM)
Descriptor:L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y., Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Last modified:2020-09-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0E
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-2-KETO-3-DEOXYARABONATE DEHYDRATASE (2-OXOBUTYRATE-BOUND FORM)
Descriptor:L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y., Ono, A., Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Last modified:2020-09-02
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
5AON
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CRYSTAL STRUCTURE OF THE CONSERVED N-TERMINAL DOMAIN OF PEX14 FROM TRYPANOSOMA BRUCEI
Descriptor:PEROXIN 14, SULFATE ION
Authors:Obita, T., Sugawara, Y., Mizuguchi, M., Watanabe, Y., Kawaguchi, K., Imanaka, T.
Deposit date:2015-09-11
Release date:2015-12-23
Last modified:2016-02-10
Method:X-RAY DIFFRACTION (1.646 Å)
Cite:Characterization of the Interaction between Trypanosoma Brucei Pex5P and its Receptor Pex14P.
FEBS Lett., 590, 2016
5AZG
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CRYSTAL STRUCTURE OF LGG-1 COMPLEXED WITH A UNC-51 PEPTIDE
Descriptor:Protein lgg-1, Serine/threonine-protein kinase unc-51, CADMIUM ION
Authors:Watanabe, Y., Fujioka, Y., Noda, N.N.
Deposit date:2015-10-05
Release date:2015-12-30
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
5AZH
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CRYSTAL STRUCTURE OF LGG-2 FUSED WITH AN EEEWEEL PEPTIDE
Descriptor:EEEWEEL peptide,Protein lgg-2, MAGNESIUM ION
Authors:Watanabe, Y., Fujioka, Y., Noda, N.N.
Deposit date:2015-10-05
Release date:2015-12-30
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
5AZF
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CRYSTAL STRUCTURE OF LGG-1 COMPLEXED WITH A WEEL PEPTIDE
Descriptor:Protein lgg-1, peptide from Autophagy-related protein 19, CADMIUM ION, ...
Authors:Watanabe, Y., Noda, N.N.
Deposit date:2015-10-05
Release date:2015-12-30
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
5JGE
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CRYSTAL STRUCTURE OF ATG19 COILED-COIL COMPLEXED WITH APE1 PROPEPTIDE
Descriptor:Autophagy-related protein 19, Ape1 propeptide
Authors:Watanabe, Y., Noda, N.N.
Deposit date:2016-04-20
Release date:2016-06-29
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
2E2Y
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CRYSTAL STRUCTURE OF F43W/H64D/V68I MYOGLOBIN
Descriptor:Myoglobin, SULFATE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ohki, T., Ueno, T., Hikage, T., Suzuki, A., Yamane, T., Watanabe, Y.
Deposit date:2006-11-18
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Reactivities of oxo and peroxo intermediates studied by hemoprotein mutants
Acc.Chem.Res., 40, 2007
3VM4
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CYTOCHROME P450SP ALPHA (CYP152B1) IN COMPLEX WITH (R)-IBUPROPHEN
Descriptor:Fatty acid alpha-hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, (2R)-2-[4-(2-methylpropyl)phenyl]propanoic acid, ...
Authors:Fujishiro, T., Shoji, O., Nagano, S., Sugimoto, H., Shiro, Y., Watanabe, Y.
Deposit date:2011-12-08
Release date:2012-05-09
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Chiral-substrate-assisted stereoselective epoxidation catalyzed by H2O2-dependent cytochrome P450SP alpha
Chem Asian J, 7, 2012
171916
PDB entries from 2020-12-02