Author results

2E32
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STRUCTURAL BASIS FOR SELECTION OF GLYCOSYLATED SUBSTRATE BY SCFFBS1 UBIQUITIN LIGASE
Descriptor:F-box only protein 2, S-phase kinase-associated protein 1A
Authors:Mizushima, T., Yoshida, Y., Kumanomidou, T., Hasegawa, Y., Yamane, T., Tanaka, K.
Deposit date:2006-11-20
Release date:2007-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.52 Å)
Cite:Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E33
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STRUCTURAL BASIS FOR SELECTION OF GLYCOSYLATED SUBSTRATE BY SCFFBS1 UBIQUITIN LIGASE
Descriptor:F-box only protein 2, Ribonuclease pancreatic, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Mizushima, T., Yoshida, Y., Kumanomidou, T., Hasegawa, Y., Yamane, T., Tanaka, K.
Deposit date:2006-11-20
Release date:2007-03-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
2EB8
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CRYSTAL STRUCTURE OF CU(II)(SAL-PHE)/APO-MYOGLOBIN
Descriptor:Myoglobin, PHOSPHATE ION, (N-SALICYLIDEN-L-PHENYLALANATO)-COPPER(II)
Authors:Abe, S., Okazaki, S., Ueno, T., Hikage, T., Suzuki, A., Yamane, T., Watanabe, Y.
Deposit date:2007-02-07
Release date:2007-07-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Design and Structure Analysis of Artificial Metalloproteins: Selective Coordination of His64 to Copper Complexes with Square-Planar Structure in the apo-Myoglobin Scaffold
Inorg.Chem., 46, 2007
2EB9
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CRYSTAL STRUCTURE OF CU(II)(SAL-LEU)/APO-MYOGLOBIN
Descriptor:Myoglobin, PHOSPHATE ION, (N-SALICYLIDEN-L-LEUCINATO)-COPPER(II), ...
Authors:Abe, S., Okazaki, S., Ueno, T., Hikage, T., Suzuki, A., Yamane, T., Watanabe, Y.
Deposit date:2007-02-07
Release date:2007-07-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Design and Structure Analysis of Artificial Metalloproteins: Selective Coordination of His64 to Copper Complexes with Square-Planar Structure in the apo-Myoglobin Scaffold
Inorg.Chem., 46, 2007
2EF2
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CRYSTAL STRUCTURE OF AN ARTIFICIAL METALLOPROTEIN:RH(PHEBOX-PH)/APO-A71G MYOGLOBIN
Descriptor:Myoglobin, PHOSPHATE ION, [2,6-BIS(4-PHENYL)-1,3-OXAZOLIN-2-YL]RHODIUM(III)
Authors:Abe, S., Satake, Y., Okazaki, S., Ueno, T., Hikage, T., Suzuki, A., Yamane, T., Nakajima, H., Watanabe, Y.
Deposit date:2007-02-20
Release date:2007-10-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Incorporation of a Phebox Rhodium Complex into apo-Myoglobin Affords a Stable Organometallic Protein Showing Unprecedented Arrangement of the Complex in the Cavity
ORGANOMETALLICS, 26, 2007
2RJ2
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CRYSTAL STRUCTURE OF THE SUGAR RECOGNIZING SCF UBIQUITIN LIGASE AT 1.7 RESOLUTION
Descriptor:F-box only protein 2, NICKEL (II) ION, CHLORIDE ION
Authors:Vaijayanthimala, S., Velmurugan, D., Mizushima, T., Yamane, T., Yoshida, Y., Tanaka, K.
Deposit date:2007-10-14
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
To be Published
2Z5B
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CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S PROTEASOME ASSEMBLY
Descriptor:Protein YPL144W, Uncharacterized protein YLR021W
Authors:Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.
Deposit date:2007-07-03
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2Z5C
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CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S PROTEASOME ASSEMBLY
Descriptor:Protein YPL144W, Uncharacterized protein YLR021W, Proteasome component PUP2
Authors:Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.
Deposit date:2007-07-03
Release date:2008-01-22
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2Z6O
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CRYSTAL STRUCTURE OF THE UFC1, UFM1 CONJUGATING ENZYME 1
Descriptor:Ufm1-conjugating enzyme 1, MAGNESIUM ION
Authors:Mizushima , T., Tatsumi, K., Ozaki, Y., Kawakami, T., Suzuki, A., Ogasahara, K., Komatsu, M., Kominami, E., Tanaka, K., Yamane, T.
Deposit date:2007-08-06
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
2Z6P
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CRYSTAL STRUCTURE OF THE UFC1, UFM1 CONJUGATING ENZYME 1
Descriptor:Ufm1-conjugating enzyme 1
Authors:Mizushima , T., Tatsumi, K., Ozaki, Y., Kawakami, T., Suzuki, A., Ogasahara, K., Komatsu, M., Kominami, E., Tanaka, K., Yamane, T.
Deposit date:2007-08-06
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
2ZJD
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CRYSTAL STRUCTURE OF LC3-P62 COMPLEX
Descriptor:Microtubule-associated proteins 1A/1B light chain 3B precursor, undecameric peptide from Sequestosome-1
Authors:Ichimura, Y., Kumanomidou, T., Sou, Y., Mizushima, T., Ezaki, J., Ueno, T., Kominami, E., Yamane, T., Tanaka, K., Komatsu, M.
Deposit date:2008-03-05
Release date:2008-06-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural Basis for Sorting Mechanism of p62 in Selective Autophagy
J.Biol.Chem., 283, 2008
3A1M
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A FUSION PROTEIN OF A BETA HELIX REGION OF GENE PRODUCT 5 AND THE FOLDON REGION OF BACTERIOPHAGE T4
Descriptor:chimera of thrombin cleavage site, Tail-associated lysozyme, Fibritin, ...
Authors:Yokoi, N., Suzuki, A., Hikage, T., Koshiyama, T., Terauchi, M., Yutani, K., Kanamaru, S., Arisaka, F., Yamane, T., Watanabe, Y., Ueno, T.
Deposit date:2009-04-11
Release date:2010-04-21
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Construction of Robust Bio-nanotubes using the Controlled Self-Assembly of Component Proteins of Bacteriophage T4
Small, 6, 2010
3WSO
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CRYSTAL STRUCTURE OF THE SKP1-FBG3 COMPLEX
Descriptor:F-box only protein 44, S-phase kinase-associated protein 1
Authors:Kumanomidou, T., Nishio, K., Takagi, K., Nakagawa, T., Suzuki, A., Yamane, T., Tokunaga, F., Iwai, K., Murakami, A., Yoshida, Y., Tanaka, K., Mizushima, T.
Deposit date:2014-03-18
Release date:2015-03-25
Last modified:2015-11-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Structural Differences between a Glycoprotein Specific F-Box Protein Fbs1 and Its Homologous Protein FBG3
Plos One, 10, 2015
1EE6
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CRYSTAL STRUCTURE OF PECTATE LYASE FROM BACILLUS SP. STRAIN KSM-P15.
Descriptor:PECTATE LYASE, CALCIUM ION
Authors:Akita, M., Suzuki, A., Kobayashi, T., Ito, S., Yamane, T.
Deposit date:2000-01-31
Release date:2001-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The first structure of pectate lyase belonging to polysaccharide lyase family 3.
Acta Crystallogr.,Sect.D, 57, 2001
1G01
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ALKALINE CELLULASE K CATALYTIC DOMAIN
Descriptor:ENDOGLUCANASE, CADMIUM ION, ACETIC ACID
Authors:Shirai, T., Ishida, H., Noda, J., Yamane, T., Ozaki, K., Hakamada, Y., Ito, S.
Deposit date:2000-10-05
Release date:2001-08-01
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme.
J.Mol.Biol., 310, 2001
1G0C
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ALKALINE CELLULASE K CATALYTIC DOMAIN-CELLOBIOSE COMPLEX
Descriptor:ENDOGLUCANASE, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, CADMIUM ION, ...
Authors:Shirai, T., Ishida, H., Noda, J., Yamane, T., Ozaki, K., Hakamada, Y., Ito, S.
Deposit date:2000-10-05
Release date:2001-08-01
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme.
J.Mol.Biol., 310, 2001
1UFJ
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CRYSTAL STRUCTURE OF AN ARTIFICIAL METALLOPROTEIN:FE(III)(3,3'-ME2-SALOPHEN)/APO-A71G MYOGLOBIN
Descriptor:MYOGLOBIN, FE (III) ION, PHOSPHATE ION, ...
Authors:Ueno, T., Ohashi, M., Kono, M., Kondo, K., Suzuki, A., Yamane, T., Watanabe, Y.
Deposit date:2003-05-30
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of Artificial Metalloproteins: Tight Binding of Fe(III)(Schiff-Base) by Mutation of Ala71 to Gly in Apo-Myoglobin
Inorg.Chem., 43, 2004
1UFP
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CRYSTAL STRUCTURE OF AN ARTIFICIAL METALLOPROTEIN:FE(III)(3,3'-ME2-SALOPHEN)/APO-WILD TYPE MYOGLOBIN
Descriptor:Myoglobin, PHOSPHATE ION
Authors:Ueno, T., Ohashi, M., Kono, M., Kondo, K., Suzuki, A., Yamane, T., Watanabe, Y.
Deposit date:2003-06-04
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Artificial Metalloproteins: Tight Binding of Fe(III)(Schiff-Base) by Mutation of Ala71 to Gly in Apo-Myoglobin
Inorg.Chem., 43, 2004
1WZV
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CRYSTAL STRUCTURE OF UBCH8
Descriptor:Ubiquitin-conjugating enzyme E2 L6
Authors:Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.
Deposit date:2005-03-10
Release date:2005-03-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of UbcH8
To be Published
1WZW
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CRYSTAL STRUCTURE OF UBCH8
Descriptor:Ubiquitin-conjugating enzyme E2 L6
Authors:Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.
Deposit date:2005-03-10
Release date:2005-03-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of UbcH8
To be Published
1X23
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CRYSTAL STRUCTURE OF UBCH5C
Descriptor:Ubiquitin-conjugating enzyme E2 D3
Authors:Nakanishi, M., Teshima, N., Mizushima, T., Murata, S., Tanaka, K., Yamane, T.
Deposit date:2005-04-19
Release date:2005-05-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of ubch5c
To be Published
1Z99
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SOLUTION STRUCTURE OF CROTAMINE, A MYOTOXIN FROM CROTALUS DURISSUS TERRIFICUS
Descriptor:Crotamine
Authors:Fadel, V., Bettendorff, P., Herrmann, T., de Azevedo, W.F., Oliveira, E.B., Yamane, T., Wuthrich, K.
Deposit date:2005-04-01
Release date:2006-03-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Automated NMR structure determination and disulfide bond identification of the myotoxin crotamine from Crotalus durissus terrificus.
Toxicon, 46, 2005
2B9U
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CRYSTAL STRUCTURE OF DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE FROM SULFOLOBUS TOKODAII
Descriptor:hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase
Authors:Rajakannan, V., Kondo, K., Mizushima, T., Suzuki, A., Yamane, T.
Deposit date:2005-10-13
Release date:2006-10-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of dTDP-4-dehydrorhamnose 3,5-epimerase from sulfolobus tokodaii
TO BE PUBLISHED
2EFU
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THE CRYSTAL STRUCTURE OF D-AMINO ACID AMIDASE FROM OCHROBACTRUM ANTHROPI SV3 COMPLEXED WITH L-PHENYLALANINE
Descriptor:D-Amino acid amidase, BARIUM ION, PHENYLALANINE
Authors:Okazaki, S., Suzuki, A., Mizushima, T., Komeda, H., Asano, Y., Yamane, T.
Deposit date:2007-02-26
Release date:2007-03-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of D-amino-acid amidase complexed with L-phenylalanine and with L-phenylalanine amide: insight into the D-stereospecificity of D-amino-acid amidase from Ochrobactrum anthropi SV3.
Acta Crystallogr.,Sect.D, 64, 2008
2EFX
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THE CRYSTAL STRUCTURE OF D-AMINO ACID AMIDASE FROM OCHROBACTRUM ANTHROPI SV3 COMPLEXED WITH L-PHENYLALANINE AMIDE
Descriptor:D-amino acid amidase, BARIUM ION, PHENYLALANINE AMIDE
Authors:Okazaki, S., Suzuki, A., Mizushima, T., Komeda, H., Asano, Y., Yamane, T.
Deposit date:2007-02-26
Release date:2007-03-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of D-amino-acid amidase complexed with L-phenylalanine and with L-phenylalanine amide: insight into the D-stereospecificity of D-amino-acid amidase from Ochrobactrum anthropi SV3.
Acta Crystallogr.,Sect.D, 64, 2008
171588
PDB entries from 2020-11-25